欢迎访问《茶叶科学》,今天是

利用EST-SSR分析江北茶区茶树资源的遗传多样性和遗传结构

  • 姚明哲 ,
  • 刘振 ,
  • 陈亮 ,
  • 王新超 ,
  • 马春雷 ,
  • 梁月荣
展开
  • 1. 浙江大学农业与生物技术学院,浙江 杭州310029;
    2. 中国农业科学院茶叶研究所/国家茶树改良中心,浙江 杭州310008
姚明哲(1975— ),男,山东成武人,在职博士生,主要从事茶树资源育种研究。

收稿日期: 2009-02-17

  修回日期: 2009-03-16

  网络出版日期: 2019-09-06

基金资助

国家863计划(2006AA10Z171)、浙江省“钱江人才”计划(2006R10042)和浙江省自然科学基金(Y305124、Y305105)

Genetic Diversity and Structure of Tea Germplasm Originated from Region of North Yangtze River Based on EST-SSR Markers

  • YAO Ming-zhe ,
  • LIU Zhen ,
  • CHEN Liang ,
  • WANG Xin-chao ,
  • MA Chun-lei ,
  • LIANG Yue-rong
Expand
  • 1. College of Agriculture and Biological Technology, Zhejiang University, Hangzhou 310029, China;
    2. National Center for Tea Improvement, Tea Research Institute Chinese Academy of Agricultural Sciences, Hangzhou 310008, China

Received date: 2009-02-17

  Revised date: 2009-03-16

  Online published: 2019-09-06

摘要

利用25对EST-SSR引物对江北茶区的45份茶树初级核心种质的遗传多样性、遗传结构和亲缘关系进行了分析。25对引物共检测到83个等位位点,平均每对引物可检测到等位位点3.3个,可鉴定的基因型为6个。引物的PIC值平均为0.61,扩增位点的观测杂合度高于期望杂合度。45份供试种质中可观测的等位位点平均为4.2个,有效等位位点为2.8个。等位位点观测杂合度平均为0.73,基因多样性指数为0.61,Shannon信息指数为1.11。江北茶区主要省份间茶树种质的遗传分化程度较低(Gst=0.2),而基因流(Nm=3.9)较高。AMOVA分析显示,95.97%的变异发生于居群内。45份供试种质间的遗传相似系数在0.32~0.89之间,聚类分析表明供试资源在亲缘关系上未表现出明显的地区分化。湖北、安徽和陕西三个主要省份茶树种质间的遗传距离平均为0.048,其中陕西资源在亲缘关系上略远于湖北和安徽。

本文引用格式

姚明哲 , 刘振 , 陈亮 , 王新超 , 马春雷 , 梁月荣 . 利用EST-SSR分析江北茶区茶树资源的遗传多样性和遗传结构[J]. 茶叶科学, 2009 , 29(3) : 243 -250 . DOI: 10.13305/j.cnki.jts.2009.3.011

Abstract

The 25 pairs of EST-SSR primers were used to analyze the genetic diversity, genetic structure and genetic relationship of 45 tea accessions originated from region of north Yangtze River. Totally 83 alleles were identified, on an average of 3.3 alleles each pair of primers. The mean of polymorphism information content (PIC) was 0.61. The observed heterozygosity (Ho) was averagely higher than the expected heterozygosity (He). Among 45 tea accessions the average numbers of the observed alleles were 4.2, and the number of effective alleles 2.8. The observed heterozygosity, gene diversity and Shannon information index were 0.73, 0.61 and 1.11, respectively. The low genetic difference (Gst=0.2) and high geneflow (Nm=3.9) of tea populations from Hubei, Anhui and Shaanxi were found. Analysis of molecular variance (AMOVA) showed that variance components inter-population and intra-population were 4.03% and 95.97% respectively. The paired similarity coefficients of 45 accessions were from 0.32 to 0.89. No clearly regional partition among 45 accessions was found from the dendrogram. The high level of genetic similarity was demonstrated among tea population of Hubei, Anhui and Shaanxi province, and Shaanxi population showed relatively distant relationship comparing to population of Hubei and Anhui.

参考文献

[1] 中国茶树品种志编写委员会. 中国茶树品种志[M]. 上海: 上海科学技术出版社, 2001: 3~4.
[2] Kaundun SS, Matsumoto S.Heterologous nuclear and chloroplast microsatellite amplification and variation in tea, Camellia sinensis[J]. Genome, 2002, 45:1041~1048.
[3] Freeman S, West J, James C, et al. Isolation and characterization of highly polymorphic microsatellites in tea (Camellia sinensis)[J]. Mol Ecol Notes, 2004, 4: 324~326.
[4] Hung CY, Wang KH, Huang CC, et al. Isolation and characterization of 11 microsatellite loci from Camellia sinensis in Taiwan using PCR-based isolation of microsatellite arrays (PIMA)[J]. Conserv Genet, 2008, 9: 779~781.
[5] 金基强, 崔海瑞, 陈文岳, 等. 茶树EST-SSR 的信息分析与标记建立[J]. 茶叶科学, 2006, 26(1): 17~23.
[6] Zhao L P, Liu Z, Chen L, et al. Generation and characterization of polymorphic expressed sequence tag-derived polymorphic microsatellites from tea plant (Camellia sinensis) and cross-species amplification in its closely related species and varieties[J]. Conserv Genet,, 2008, 9: 1327~1331.
[7] 陈亮, 陈大明, 高其康, 等. 茶树基因组DNA提取与鉴定[J]. 茶叶科学, 1997, 17(2): 177~181.
[8] 刘振, 王新超, 赵丽萍, 等. 基于EST-SSR的西南茶区茶树资源遗传多样性和亲缘关系分析[J]. 分子植物育种, 2008, 6(1): 100~110.
[9] Anderson JA, Churchill GA, Autrique JE, et al. Optimizing parental selection for genetic linkage maps[J]. Genome, 1993, 36: 181~186.
[10] Yeh FC, Boyle TJB.Population genetic analysis of codominant and dominant markers and quantitative traits[J]. Belgian J Bot, 1997, 129: 157.
[11] Rohlf F J.NTSYSpc: Numerical taxonomy and multivariate analysis system, Version 2.0. New York: Exeter Software, Applied Biostatistics Inc, New York, USA, 2000, 16~29.
[12] Wright S.Evolution and the genetics of populations in variability within and among natural populations. Chicago: University of Chicago Press, 1978: 4.
[13] Wachira FN, Waugh R, Hackett CA, et al. Detection of genetic diversity in tea (Camellia sinensis) using RAPD markers[J]. Genome, 1995, 38: 201~210.
[14] Paul S, Wachira FN, Powell W, et al. Polymorphism and genetic differentiation among populations of Indian and Kenyan tea [Camellia sinensis (L.) O. Kuntze] revealed by AFLP markers[J]. Thero Appl Genet, 1997, 94: 255~263.
[15] Kaundun SS, Zhyvoloup A, Park YG.Evaluation of the genetic diversity among elite tea (Camellia sinensis var. sinensis) accessions using RAPD markers[J]. Euphytica, 2000, 115: 7~16.
[16] Matsumoto S, Kiriiwa Y, Takeda Y.Differentiation of Japanese green tea cultivars as revealed by RFLP analysis of phenylalanine ammonia-lyase DNA[J]. Thero Appl Genet, 2002, 104: 998~1002.
[17] Yao M Z, Chen L, Liang Y R.Genetic diversity among tea cultivars from China, Japan and Kenya revealed by ISSR markers and its implication for parental selection in tea breeding programmes[J]. Plant Breeding, 2008, 127: 166~172.
[18] 游小青, 李名君. 茶树种质资源萜烯指数分析[A]. 中国农业科学院茶叶研究所编. 茶叶科学研究论文集[C]. 上海: 上海科学技术出版社: 1992, 140~146.
文章导航

/