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基于EST-SSR的福云(半)同胞系茶树品种(系)遗传多样性和亲缘关系分析

  • 余继忠 ,
  • 黄海涛 ,
  • 姚明哲 ,
  • 杨亚军
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  • 1. 中国农业科学院茶叶研究所,浙江 杭州 310008;
    2. 杭州市农业科学研究院茶叶研究所,浙江 杭州 310024
余继忠(1968— ),男,高级农艺师,在职博士研究生,主要从事茶树遗传育种研究。

收稿日期: 2009-08-19

  修回日期: 2010-01-13

  网络出版日期: 2019-09-11

基金资助

国家“863”计划(2006AA10Z171),“现代农业(茶叶)产业技术体系”资助

Analysis of Genetic Diversity and Relationship of Half-sib Tea Cultivars Related to Fuding Dabai and Yunnan Daye Using EST-SSR Markers

  • YU Ji-zhong ,
  • HUANG Hai-tao ,
  • YAO Ming-zhe ,
  • YANG Ya-jun
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  • 1. Tea Research Institute of the Chinese Academy of Agricultural Sciences,Hangzhou 310008, China;
    2. Tea Research Institute Hangzhou Academy of Agricultural Sciences, Hangzhou 310024, China

Received date: 2009-08-19

  Revised date: 2010-01-13

  Online published: 2019-09-11

摘要

利用EST-SSR标记对以福鼎大白茶或云南大叶茶品种为亲本选育的40个品种(系)或衍生品种(系)的亲缘关系和遗传背景进行了分析评估。28对引物在40个供试品种间共检测到99个等位位点,每对引物为2~6个,平均3.54个;遗传多态性信息量(PIC)在0.13~0.79之间,平均值为0.59;期望杂合度(He)在0.08~0.84之间,平均值为0.58;观测杂合度(Ho)在0.10~1.00之间,平均值为0.71;Shannon指数平均为1.14。按相似系数为0.55可将参试的40个品种分为四大类。研究结果发现以云南大叶茶为母本的茶树品种比福鼎大白茶为母本的品种遗传多样性更高。

本文引用格式

余继忠 , 黄海涛 , 姚明哲 , 杨亚军 . 基于EST-SSR的福云(半)同胞系茶树品种(系)遗传多样性和亲缘关系分析[J]. 茶叶科学, 2010 , 30(3) : 184 -190 . DOI: 10.13305/j.cnki.jts.2010.03.006

Abstract

40 half-sib tea cultivars related to Fuding Dabai and Yunnan Daye were used to analyze the genetic diversity and relationship based on EST-SSR markers. Totally 99 alleles were amplified using the 28 pairs of EST-SSR primers, the number of alleles per primer ranged from 2 to 6, on average of 3.54. The polymorphism information content (PIC) varied from 0.13 to 0.79, on average of 0.59. The expected heterozygosity (He) varied from 0.08 to 0.84 and the observed heterozygosity (Ho) ranged from 0.08 to 1.00, on average of 0.59 and 0.71, respectively. The Shannon index of the population was 1.14. The 40 half-sib tea cultivars were classified into 4 groups with the similarity coefficient at 0.55. The results showed that the genetic polymorphism of half-sib tea cultivars related to Fuding Dabai was more abundant than those of Yunnan Daye.

参考文献

[1] Gupta P K, Rustgi S, Sharma S, et al. Transferable EST-SSR markers for the study of polymorphism and genetic diversity in bread wheat[J]. Molecular Genetics and Genomics, 2003(270): 315-323.
[2] Yanik B, Jun Z, Dainis R, et al. Characterization of EST-SSRs in loblolly pine and spruce, Tree Genetics and Genomes[J]. 2007(3): 251-259.
[3] 王家麟, 孙佳莹, 于清岩, 等. EST-SSRs的开发及应用研究进展[J]. 生物信息学, 2006, 5(3): 140-142.
[4] Eujayl I, Sorrells M E, Baum M, et al. Assessment of genotypic variation among cultivated durum wheat based on EST-SSRs and genomic SSRs[J]. Euphytica, 2001(119): 39-43.
[5] Gao L F, Tang J F, Li H W, et al. Analysis of microsatellites in major crops assessed by computational and experimental approaches[J]. Molecular Breeding, 2003(12): 245-261.
[6] 金基强, 崔海瑞, 龚晓春, 等. 用EST-SSR标记对茶树种质资源的研究[J]. 遗传, 2007, 29(1): 103-108.
[7] 刘振, 王新超, 赵丽萍, 等. 基于EST-SSR 的西南地区茶树资源遗传多样性和亲缘关系分析[J]. 分子植物育种, 2008, 6(1): 100-110.
[8] 叶乃兴. 我国茶树育种的骨干亲本及其系谱分析[J]. 中国茶叶, 2008, 29(4): 11-13.
[9] 陈亮, 陈大明, 高其康, 等. 茶树基因组DNA提取与鉴定[J]. 茶叶科学, 1997, 17(2): 177-181.
[10] Ghislain M, Andrade D, Rodríguez F, et al. Genetic analysis of the cultivated potato Solanum tuberosum L. Phureja group using RAPDs and nuclear SSRs[J]. Theoretical and Applied Genetics, 2006(113): 1515-1527.
[11] Botstein D, White R L, Skolnick M, et al. Construction of a genetic linkage map in man using restriction fragment length polymorphisms[J]. American Journal of Human Genetics, 1980(32): 314-331.
[12] Martinez L E, Cavagnaro P F, Masuelli R W, et al. SSR-based assessment of genetic diversity in south American Vitis vinifera varieties[J], Plant Science, 2006, 170: 1036-1044.
[13] Prevost A, Wilkinson M J.A new system of comparing PCR primers applied to ISSR fingerprinting of potato cultivars[J]. Theor Appl Genet, 1999(98): 107-112.
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