Genetic Analysis and Marker Development for Wuyi Tea (Camellia sinensis, Synonym: Thea bohea L.) Based on GBS-SNP

LI Li; LUO Shengcai; WANG Feiquan; LI Xiangru; FENG Hua; SHI Yutao; YE Jianghua; LIU Fei; ZHAO Jialin; LI Shuying; ZHANG Bo

doi:10.13305/j.cnki.jts.2023.03.001

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Journal of Tea Science ›› 2023, Vol. 43 ›› Issue (3) : 310-324. DOI: 10.13305/j.cnki.jts.2023.03.001

Research Paper

Genetic Analysis and Marker Development for Wuyi Tea (Camellia sinensis, Synonym: Thea bohea L.) Based on GBS-SNP

LI Li^1,3, LUO Shengcai², WANG Feiquan^1,3, LI Xiangru^1,4, FENG Hua^1,3, SHI Yutao^1,3, YE Jianghua^1,3, LIU Fei¹, ZHAO Jialin¹, LI Shuying¹, ZHANG Bo^1,3,*

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Abstract

In order to understand the genetic diversity background of Wuyi tea (Camellia sinensis, Synonym: Thea bohea L.), 126 Wuyi tea cultivars/strains and 223 elite tea cultivars/strains (a total of 349 tea germplasm resources) from 12 different regions were collected. Genotyping by sequencing (GBS) technology was used to screen 973 high-quality core SNPs for genetic diversity and background analysis. Model-based structure (Structure), phylogenetic tree construction (NJ-tree) and principal component analysis (PCA) show that the 349 tea resources could be divided into 5 subgroups, and the clustering of subgroups was mainly based on the genetic relationship between tea resources, rather than morphological characteristics such as tree type or leaf shape. Gene flow analysis shows that Wuyi tea might have spread from southern Fujian Province to Wuyi Mountain in northern Fujian Province and from Wuyi Mountain to Zhejiang Province. Genetic similarity analysis shows that among 349 tea cultivars/strains, 136 pairs of cultivars/strains had genetic similarity greater than 0.9, among which 26 pairs involved Wuyi tea. Based on the results of gene flow and genetic similarity, the genetic relationship and background of some representative and controversial Wuyi tea were discussed and analyzed. Furthermore, through the discernibility analysis of pairwise comparison, 21 SNPs were selected from 973 SNP markers that can 100% identify 349 tea cultivars/strains, among which 18 SNPs could 100% identify 126 Wuyi tea cultivars/strains. Genetic fingerprints were established and identification primers were developed. These results provided valuable information for the management and breeding of Wuyi tea in the future.

Key words

GBS / gene flow / genetic fingerprints / genetic similarity / identification primer / Wuyi tea

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LI Li, LUO Shengcai, WANG Feiquan, LI Xiangru, FENG Hua, SHI Yutao, YE Jianghua, LIU Fei, ZHAO Jialin, LI Shuying, ZHANG Bo. Genetic Analysis and Marker Development for Wuyi Tea (Camellia sinensis, Synonym: Thea bohea L.) Based on GBS-SNP[J]. Journal of Tea Science. 2023, 43(3): 310-324 https://doi.org/10.13305/j.cnki.jts.2023.03.001

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